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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10259462_10259672_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10259462 - 10259672
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCCTGGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAGACACTGATA
Flanking Amino Acid:
VDSCKPGDEIELTGIYHNNY
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
0.9
71.8
38.1
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
44.3
-0.4
1.9
54.01
38.1

Associated Gene:

Gene:
MCM2
Ensembl Gene ID:
ENSAPLG00000004520
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038103
10253304 - 10263807
10504
ENSAPLT00000004689
10253304 - 10264248
10945