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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10263118_10263616_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10263118 - 10263616
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTCTGCTGATT
Flanking Amino Acid:
GEELIGEGMERDYRPIPELD
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
70.8
0.47
1
65.8
45.3
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
45.9
-0.2
2.3
72.66
38.6

Associated Gene:

Gene:
MCM2
Ensembl Gene ID:
ENSAPLG00000004520
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004689
10253304 - 10264248
10945