Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10268437_10271239_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10268437 - 10271239

Intron Length:

2803

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCTG

5'SS Class:

major

3'SS Sequence:

TGACCCGGACCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTTGAC

U12 Branch Point Sequence:

CTGTGTTTGACC

Flanking Amino Acid:

MQQEGRMLQSMM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

60.4

45.8

Major BPS

68.7

0.47

1.2

63.1

44.5

Major PPT

52.1

0.05

1.1

43.7

Minor 5ss

27.5

-2.6

3.5

37.1

47.5

Minor BPS

55.1

0.14

1.8

64.69

42.1

Associated Gene:

Gene:

TPRA1

Ensembl Gene ID:

ENSAPLG00000004211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022015

10268374 - 10282853

14480