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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10270560_10271239_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10270560 - 10271239
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TGACCCGGACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
CTGTGTTTGACC
Flanking Amino Acid:
MQEGRMLQSMM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.3
40.1
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
52.1
0.05
1.1
43.7
42
Minor 5ss
31.8
-2.1
3.1
36.5
41.9
Minor BPS
55.1
0.14
1.8
64.69
42.1

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026656
10269781 - 10282853
13073