About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10270990_10271239_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10270990 - 10271239
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
TGACCCGGACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
CTGTGTTTGACC
Flanking Amino Acid:
MLKQEGRMLQSMM
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
52.1
0.05
1.1
43.7
42
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
55.1
0.14
1.8
64.69
42.1

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004346
10270981 - 10282853
11873