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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10271443_10271612_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10271443 - 10271612
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTATTTACTT
Flanking Amino Acid:
LLLYEDIGKSRVRYWDLLLL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
88.6
0.87
0.7
84.4
30.2
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
64
0.52
1.8
84.41
36.8

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022015
10268374 - 10282853
14480
ENSAPLT00000004346
10270981 - 10282853
11873
ENSAPLT00000031848
10269243 - 10282853
13611
ENSAPLT00000026656
10269781 - 10282853
13073