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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10274331_10275952_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10274331 - 10275952
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCTTCTAATCA
Flanking Amino Acid:
ASDAATVADKILWEITRFFL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.9
0.61
0.9
73.9
36.8
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
49.5
-0
1.9
61.84
45

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026656
10269781 - 10282853
13073
ENSAPLT00000022015
10268374 - 10282853
14480
ENSAPLT00000004346
10270981 - 10282853
11873
ENSAPLT00000031848
10269243 - 10282853
13611