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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10276026_10277033_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10276026 - 10277033
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TCCTTAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCCTTAATT
Flanking Amino Acid:
LSVVILGLAFGHLESKSSVK
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
35.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79
0.65
0.9
70.2
39.1
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
90.8
1.36
0.8
97.44
26.3

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022015
10268374 - 10282853
14480
ENSAPLT00000004346
10270981 - 10282853
11873
ENSAPLT00000031848
10269243 - 10282853
13611
ENSAPLT00000026656
10269781 - 10282853
13073