Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10277114_10278264_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10277114 - 10278264

Intron Length:

1151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTACG

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

AGTGTAGTAACG

Flanking Amino Acid:

VLSLAYSVTQGTLEILYPDA

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

80.5

33.9

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

73.9

0.54

0.8

66.1

35.2

Minor 5ss

30.6

-2.2

2.5

34.1

41.4

Minor BPS

43.1

-0.6

2.3

51.05

43.2

Associated Gene:

Gene:

TPRA1

Ensembl Gene ID:

ENSAPLG00000004211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022015

10268374 - 10282853

14480

ENSAPLT00000004346

10270981 - 10282853

11873

ENSAPLT00000031848

10269243 - 10282853

13611

ENSAPLT00000026656

10269781 - 10282853

13073