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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10279986_10280593_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10279986 - 10280593
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTTTGAATA
Flanking Amino Acid:
LLCVDIIEGLCCVDATTFLY
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.2
39
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.7
80.4
24.9
Minor 5ss
45.6
-0.5
2.5
56.4
42.4
Minor BPS
54
0.12
1.5
63.99
36.9

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031848
10269243 - 10282853
13611
ENSAPLT00000026656
10269781 - 10282853
13073
ENSAPLT00000022015
10268374 - 10282853
14480
ENSAPLT00000004346
10270981 - 10282853
11873