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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10280675_10281745_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10280675 - 10281745
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTAATAACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATCTTTAATA
Flanking Amino Acid:
IYVAFLKGFFGSEPKILFSY
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.6
0.46
1
60.5
44.6
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
72.7
0.71
1.1
71.88
33.7

Associated Gene:

Gene:
TPRA1
Ensembl Gene ID:
ENSAPLG00000004211
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022015
10268374 - 10282853
14480
ENSAPLT00000004346
10270981 - 10282853
11873
ENSAPLT00000031848
10269243 - 10282853
13611
ENSAPLT00000026656
10269781 - 10282853
13073