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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10288215_10289346_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10288215 - 10289346
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TCCTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTCTCTTACAGT
Flanking Amino Acid:
AAEGKPKPPTGIQPPTASNS
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
83.4
0.75
0.7
76.6
32
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
46.7
-0.1
2.3
70.57
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004192
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004304
10286776 - 10345396
58621