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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10290820_10319064_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10290820 - 10319064
Intron Length:
28245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATTC
Flanking Amino Acid:
NEERQRAAQLPADLDAWAME
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.7
0.51
1
71.7
37.5
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
59.3
0.27
1.6
65.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004192
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004304
10286776 - 10345396
58621