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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10319086_10324042_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10319086 - 10324042
Intron Length:
4957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GCTTCTTCTACT
Flanking Amino Acid:
AQLPADLDAWAMELQGREAE
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
40.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.9
0.83
0.7
80.3
31.7
Minor 5ss
46
-0.4
2.8
57.8
46.4
Minor BPS
54.3
0.22
1.9
72.95
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004192
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004304
10286776 - 10345396
58621