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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10324127_10344077_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10324127 - 10344077
Intron Length:
19951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTTTTGAGCT
Flanking Amino Acid:
KEQLARIERKNAEIYKLTSE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
58.7
0.35
1.6
78.81
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004192
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004304
10286776 - 10345396
58621