About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10344149_10345281_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10344149 - 10345281
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TTTGCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTCTCTTGAATT
Flanking Amino Acid:
EAATKAEEWIKCVIRCQFLQ
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
74
29.5
Major BPS
84
0.85
0.9
75
39.9
Major PPT
86.1
0.81
0.8
80.4
31.7
Minor 5ss
30
-2.3
2.9
35.1
34.7
Minor BPS
72
0.77
1.3
84.4
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004192
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004304
10286776 - 10345396
58621