Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10455456_10478503_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10455456 - 10478503

Intron Length:

23048

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTAA

5'SS Class:

major

3'SS Sequence:

TCTTTCTCTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGAAAT

U12 Branch Point Sequence:

TCTTTCTCTACA

Flanking Amino Acid:

KQQTTEQETESAYTEPYKVC

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

66.4

Major BPS

0.05

1.3

44.6

Major PPT

89.2

0.88

0.6

84.1

24.1

Minor 5ss

42.2

-0.9

3.1

55.3

48.9

Minor BPS

56.8

0.21

1.9

71.02

Associated Gene:

Gene:

FGD5

Ensembl Gene ID:

ENSAPLG00000007924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008272

10453291 - 10540263

86973