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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10506408_10510440_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10506408 - 10510440
Intron Length:
4033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCACCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTGCTTCACCC
Flanking Amino Acid:
PDSTEYEATQAALFIVSEIT
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
75.8
0.64
1
65.8
41
Major PPT
73.7
0.53
0.8
69.9
30.5
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
52.8
0.07
1.9
70.01
41.9

Associated Gene:

Gene:
FGD5
Ensembl Gene ID:
ENSAPLG00000007924
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008272
10453291 - 10540263
86973