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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10510500_10518021_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10510500 - 10518021
Intron Length:
7522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GTCTCCTAAATG
Flanking Amino Acid:
DRANESMLQGENLQKLVHIE
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
81.4
0.71
0.7
81
24.2
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
61
0.21
1.8
63.65
44.7

Associated Gene:

Gene:
FGD5
Ensembl Gene ID:
ENSAPLG00000007924
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008272
10453291 - 10540263
86973