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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10519861_10526131_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10519861 - 10526131
Intron Length:
6271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
TCTCTTCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATG
Flanking Amino Acid:
KNKHPRHLFLMNDVLLYTYP
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74.2
37
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
77.6
0.62
0.8
73.9
30
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
58.5
0.12
1.8
68.07
40.1

Associated Gene:

Gene:
FGD5
Ensembl Gene ID:
ENSAPLG00000007924
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008272
10453291 - 10540263
86973