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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10526216_10527803_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10526216 - 10527803
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
CATTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTAACTCCACC
Flanking Amino Acid:
KNTLAVSGMKVSRPVTEKAQ
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84
0.76
0.8
77.2
36.8
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
48.2
-0.1
2.2
68.76
42.2

Associated Gene:

Gene:
FGD5
Ensembl Gene ID:
ENSAPLG00000007924
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008272
10453291 - 10540263
86973