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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10527884_10530705_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10527884 - 10530705
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
TTTCATTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTGCATTGACT
Flanking Amino Acid:
YDEYCLTLSASSCSERDDWY
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.7
0.71
0.8
76.4
31.9
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
63.6
0.51
1.8
81.45
40

Associated Gene:

Gene:
FGD5
Ensembl Gene ID:
ENSAPLG00000007924
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008272
10453291 - 10540263
86973