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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10552839_10561500_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10552839 - 10561500
Intron Length:
8662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGTAAA
5'SS Class:
major
3'SS Sequence:
TTGGAAAATGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATATTGTTAATA
Flanking Amino Acid:
MKLCDFFLAVTVVQVGCKD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.6
37
Major BPS
84.4
0.85
1
84
34.5
Major PPT
49.7
-0
1.2
47.5
43.2
Minor 5ss
28.7
-2.4
2.9
33
42.2
Minor BPS
58.1
0.25
2
69.94
36.6

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044915
10551407 - 10580885
29479