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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10570229_10571821_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10570229 - 10571821
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGGTTTTCAACA
Flanking Amino Acid:
PTFVADKDGARSAGLLDPGM
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
74.1
0.54
1
70
40.3
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
60.2
0.32
1.5
67.68
39

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041507
10547403 - 10589246
41844
ENSAPLT00000041283
10547403 - 10580963
33561
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000044705
10551407 - 10580963
29557