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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10571916_10572332_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10571916 - 10572332
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TAATTCTTACCC
Flanking Amino Acid:
GTVLLAADSKAETSQGALGT
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
80.7
0.69
0.8
80.7
31.3
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
65.4
0.46
1.6
72.05
38.8

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041507
10547403 - 10589246
41844
ENSAPLT00000041283
10547403 - 10580963
33561
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000044705
10551407 - 10580963
29557