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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10572467_10573909_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10572467 - 10573909
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
CTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTATTACTT
Flanking Amino Acid:
QEEQSASEITRAFDTLAKAL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
74.8
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.7
0.94
0.6
87.6
22.6
Minor 5ss
56.7
0.23
2.5
75.6
40.1
Minor BPS
49.4
0.04
1.8
70.96
40

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041507
10547403 - 10589246
41844
ENSAPLT00000041283
10547403 - 10580963
33561
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000044705
10551407 - 10580963
29557