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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10574088_10575052_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10574088 - 10575052
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGTA
5'SS Class:
major
3'SS Sequence:
TATTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGCCCTAACT
Flanking Amino Acid:
LLTDTHVTFKLTMPSPMPEY
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
76.5
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.3
0.82
0.8
80.9
36.4
Minor 5ss
41.7
-0.9
3.2
57.6
47.1
Minor BPS
68.7
0.66
1.8
86.22
39.4

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041507
10547403 - 10589246
41844
ENSAPLT00000041283
10547403 - 10580963
33561
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000044705
10551407 - 10580963
29557