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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10575813_10577193_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10575813 - 10577193
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AAATAATAAACA
Flanking Amino Acid:
VNHLQNSIQEDKLSGDRIKQ
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
84.9
0.79
0.7
81.1
30.5
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
46.5
-0.2
2
58.66
40

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041507
10547403 - 10589246
41844
ENSAPLT00000041283
10547403 - 10580963
33561
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044705
10551407 - 10580963
29557