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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10577332_10578206_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10577332 - 10578206
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACATACATAAAT
Flanking Amino Acid:
YLKAIVLFSPDHPGLTGSTQ
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.3
0.82
0.7
85.6
29.2
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
48.9
-0
1.9
67.11
42.6

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041283
10547403 - 10580963
33561
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000044705
10551407 - 10580963
29557
ENSAPLT00000041507
10547403 - 10589246
41844