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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10578313_10580710_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10578313 - 10580710
Intron Length:
2398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTATTCATAATT
Flanking Amino Acid:
VQKTYPEDTYRLARILVRLP
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
63.7
0.51
1.6
78.41
37.6

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007845
10551407 - 10580963
29557
ENSAPLT00000044915
10551407 - 10580885
29479
ENSAPLT00000044705
10551407 - 10580963
29557
ENSAPLT00000041283
10547403 - 10580963
33561