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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10578313_10589230_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10578313 - 10589230
Intron Length:
10918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TCAAATTTAAGT
Flanking Amino Acid:
VQKTYPEDTYRNCVT*
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
82.7
0.74
0.9
76.8
37.1
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
49.4
0.04
1.8
66.23
44.3

Associated Gene:

Gene:
NR2C2
Ensembl Gene ID:
ENSAPLG00000007538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041507
10547403 - 10589246
41844