About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10591745_10591975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10591745 - 10591975
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
TPSPFLRFYLDSGEQVLVDV
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
64.7
41
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
83.7
0.76
0.9
81
35.4
Minor 5ss
31.2
-2.1
3.4
34.3
42
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
MRPS25
Ensembl Gene ID:
ENSAPLG00000029888
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021837
10591423 - 10592474
1052