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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10592064_10592281_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10592064 - 10592281
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTGATGGTAACA
Flanking Amino Acid:
EHIKKILGKSKETLEKEERE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
41.8
-0.6
2.5
54.69
44.5

Associated Gene:

Gene:
MRPS25
Ensembl Gene ID:
ENSAPLG00000029888
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021837
10591423 - 10592474
1052