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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10597514_10598461_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10597514 - 10598461
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCTCCCTCCATG
Flanking Amino Acid:
EELKKRRLHMASLEAHRRQE
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.3
41.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.9
0.58
0.9
74
41
Minor 5ss
31.4
-2.1
3.1
36.3
41.6
Minor BPS
47.8
-0.3
2
56.83
45

Associated Gene:

Gene:
RBSN
Ensembl Gene ID:
ENSAPLG00000007412
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007699
10596386 - 10606535
10150