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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10599023_10599522_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10599023 - 10599522
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGCTTTGATT
Flanking Amino Acid:
QRVYEFIDALSKKILNLGLH
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.3
0.57
1
73.3
41.2
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
72.8
0.8
1.3
86.34
34.1

Associated Gene:

Gene:
RBSN
Ensembl Gene ID:
ENSAPLG00000007412
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007699
10596386 - 10606535
10150