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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10599610_10601507_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10599610 - 10601507
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCCT
5'SS Class:
major
3'SS Sequence:
ATTTATTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
PEYIKMAESLNAGETTYNLE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
69.1
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.2
0.66
0.8
77.9
35.5
Minor 5ss
42.2
-0.9
3.1
58.4
39.9
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
RBSN
Ensembl Gene ID:
ENSAPLG00000007412
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007699
10596386 - 10606535
10150