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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10602674_10603565_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10602674 - 10603565
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATGTAACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
CTGTATGTAACT
Flanking Amino Acid:
CMELVSLPLASKLTSASKEA
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
68.3
0.41
1
64.1
42
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
49.7
0.05
2.2
72.11
45.1

Associated Gene:

Gene:
RBSN
Ensembl Gene ID:
ENSAPLG00000007412
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007699
10596386 - 10606535
10150