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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10603886_10604538_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10603886 - 10604538
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAATT
Flanking Amino Acid:
VNKLIIRLEKLTSFDRANTE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
73.1
0.52
0.9
67.2
39.1
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
78.8
0.98
1.2
92.73
29.2

Associated Gene:

Gene:
RBSN
Ensembl Gene ID:
ENSAPLG00000007412
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007699
10596386 - 10606535
10150