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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10604640_10606394_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10604640 - 10606394
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGACTCTGAAAA
Flanking Amino Acid:
MWEPQEVGAMRSHLSDF
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
62.6
0.28
1
59.9
35.8
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
51.1
0.03
1.5
61.08
37.8

Associated Gene:

Gene:
RBSN
Ensembl Gene ID:
ENSAPLG00000007412
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007699
10596386 - 10606535
10150