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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10655247_10666305_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10655247 - 10666305
Intron Length:
11059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCAAGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
49.4
0.03
2
77.25
38.5

Associated Gene:

Gene:
TMCC1
Ensembl Gene ID:
ENSAPLG00000007270
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030485
10655004 - 10738154
83151