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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10666363_10669074_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10666363 - 10669074
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAACATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTGTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
66.8
0.38
1
65.7
40
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
76.2
0.82
1.7
86.93
31.8

Associated Gene:

Gene:
TMCC1
Ensembl Gene ID:
ENSAPLG00000007270
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040187
10660528 - 10738154
77627
ENSAPLT00000030485
10655004 - 10738154
83151