Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10669787_10699325_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10669787 - 10699325

Intron Length:

29539

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTTAC

5'SS Class:

major

3'SS Sequence:

TGCTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATGTAT

U12 Branch Point Sequence:

GCTACATGTATT

Flanking Amino Acid:

VGGEEATAAARARLTSDVFL

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

72.5

33.5

Major BPS

51.4

0.04

1.4

42.8

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

42.7

-0.8

2.8

58.2

40.5

Minor BPS

43.4

-0.4

59.62

43.5

Associated Gene:

Gene:

TMCC1

Ensembl Gene ID:

ENSAPLG00000007270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007542

10669241 - 10727973

58733