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Intron Name: Anas_platyrhynchos_platyrhynchos_13_10735353_10737839_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10735353 - 10737839

Intron Length:

2487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGCCGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGGCAA

U12 Branch Point Sequence:

TTCTTGCCGACA

Flanking Amino Acid:

QSYERARDIQEALEACQTRI

Intron Amino Acid Position:

540

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

67.2

38.1

Major BPS

45.4

-0.2

1.4

52.7

43.2

Major PPT

72.9

0.52

68.9

37.3

Minor 5ss

26.2

-2.7

3.2

34.3

Minor BPS

41.4

-0.6

2.4

58.67

41.2

Associated Gene:

Gene:

TMCC1

Ensembl Gene ID:

ENSAPLG00000007270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030485

10655004 - 10738154

83151

ENSAPLT00000040187

10660528 - 10738154

77627