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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10782871_10784462_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10782871 - 10784462
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGGATGTAACC
Flanking Amino Acid:
TFLYLMTSYQMTRVKVAVCN
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
76.3
37.7
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
46.9
-0.2
2.2
62.47
43.4

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044458
10760959 - 10837303
76345
ENSAPLT00000006231
10760959 - 10838848
77890