Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10784564_10785227_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10784564 - 10785227

Intron Length:

664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGACTT

5'SS Class:

strong_major

3'SS Sequence:

ATGTGCACTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

ACAACCACAAAT

Flanking Amino Acid:

AYCGWCTMETRCSLQHECTN

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

75.5

40.6

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

0.4

59.3

41.2

Minor 5ss

36.5

-1.5

3.6

48.1

Minor BPS

44.6

-0.3

1.9

59.32

42.9

Associated Gene:

Gene:

PLXND1

Ensembl Gene ID:

ENSAPLG00000005859

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044458

10760959 - 10837303

76345

ENSAPLT00000006231

10760959 - 10838848

77890