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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10785832_10787322_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10785832 - 10787322
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
GCTCTTGCAATC
Flanking Amino Acid:
EKYPAFPDNQDHVIVETALR
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
85.8
0.81
0.7
84.9
30
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
41.2
-0.6
2
47.65
36.4

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044458
10760959 - 10837303
76345
ENSAPLT00000006231
10760959 - 10838848
77890