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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10789272_10790562_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10789272 - 10790562
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAATTGCA
5'SS Class:
major
3'SS Sequence:
ATGCCCTCGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTGAGGGAACT
Flanking Amino Acid:
MLQETVSCWHTCTG
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
72.8
35
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
62.8
0.29
1
55
40.8
Minor 5ss
24.4
-2.9
3.9
32.8
35.7
Minor BPS
37.8
-0.8
2.6
61.18
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024672
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032165
10788851 - 10790574
1724