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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10794965_10795825_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10794965 - 10795825
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATGTCCTTAGTT
Flanking Amino Acid:
SSAVECVHVLLHTSEKSHLF
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
61.4
44.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
28.3
-2.5
2.7
29.1
37
Minor BPS
70.7
0.73
1.5
82.37
39.4

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006231
10760959 - 10838848
77890
ENSAPLT00000044458
10760959 - 10837303
76345