Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10795920_10798347_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10795920 - 10798347

Intron Length:

2428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGAGTT

5'SS Class:

major

3'SS Sequence:

TCTTGTGGTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAC

U12 Branch Point Sequence:

AGAAGCTCACTT

Flanking Amino Acid:

RFIDSPETMTVEVYNCGTGS

Intron Amino Acid Position:

854

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.3

71.6

38.5

Major BPS

0.28

1.1

63.1

35.8

Major PPT

68.9

0.43

61.5

44.5

Minor 5ss

37.9

-1.4

3.4

56.2

Minor BPS

40.5

-0.6

53.13

41.9

Associated Gene:

Gene:

PLXND1

Ensembl Gene ID:

ENSAPLG00000005859

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044458

10760959 - 10837303

76345

ENSAPLT00000006231

10760959 - 10838848

77890