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Intron Name: Anas_platyrhynchos_platyrhynchos_13_10800862_10804197_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10800862 - 10804197

Intron Length:

3336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGAAAA

U12 Branch Point Sequence:

CAATTGAGAACT

Flanking Amino Acid:

GKSKERYSYVLPVVQSIAPP

Intron Amino Acid Position:

993

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

73.6

30.3

Major BPS

50.2

0.01

1.1

57.3

36.3

Major PPT

78.4

0.64

0.8

76.2

32.4

Minor 5ss

27.7

-2.6

31.2

36.9

Minor BPS

-0.5

2.2

59.54

43.3

Associated Gene:

Gene:

PLXND1

Ensembl Gene ID:

ENSAPLG00000005859

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044458

10760959 - 10837303

76345

ENSAPLT00000006231

10760959 - 10838848

77890